HL_6YEF_056

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_056 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.0978

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6YEF|1|A|C|2401
6YEF|1|A|G|2402
6YEF|1|A|A|2403
6YEF|1|A|A|2404
6YEF|1|A|A|2405
6YEF|1|A|G|2406

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain R

50S ribosomal protein L18