HL_6YEF_057

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

6YEF|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_057 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1016

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6YEF|1|A|C|2431
6YEF|1|A|G|2432
6YEF|1|A|C|2433
6YEF|1|A|A|2434
6YEF|1|A|U|2435
6YEF|1|A|G|2436
6YEF|1|A|G|2437
6YEF|1|A|A|2438
6YEF|1|A|A|2439
6YEF|1|A|G|2440

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15