HL_6YEF_066

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6YEF|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1015

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YEF|1|A|A|2839
6YEF|1|A|A|2840
6YEF|1|A|A|2841
6YEF|1|A|G|2842
6YEF|1|A|A|2843
6YEF|1|A|U|2844
6YEF|1|A|G|2845
6YEF|1|A|A|2846
6YEF|1|A|U|2847

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain Q

50S ribosomal protein L17