HL_6YEF_067

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_067 not in the Motif Atlas

Homologous match to HL_7A0S_068

Geometric discrepancy: 0.1058

The information below is about HL_7A0S_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6YEF|1|A|G|2876
6YEF|1|A|G|2877
6YEF|1|A|U|2878
6YEF|1|A|G|2879
6YEF|1|A|A|2880
6YEF|1|A|C|2881

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L19