HL_6YEF_081

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAGAACAUAUGUGUAAGUAACUGUGCACAUCUUGACGGUAC

Length

43 nucleotides

Bulged bases

6YEF|1|a|C|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|a|G|454
6YEF|1|a|G|455
6YEF|1|a|A|456
6YEF|1|a|A|457
6YEF|1|a|G|458
6YEF|1|a|A|459
6YEF|1|a|A|460
6YEF|1|a|C|461
6YEF|1|a|A|462
6YEF|1|a|U|463
6YEF|1|a|A|464
6YEF|1|a|U|465
6YEF|1|a|G|466
6YEF|1|a|U|467
6YEF|1|a|G|468
6YEF|1|a|U|469
6YEF|1|a|A|470
6YEF|1|a|A|471
6YEF|1|a|G|472
6YEF|1|a|U|473
6YEF|1|a|A|474
6YEF|1|a|A|475
6YEF|1|a|C|476
6YEF|1|a|U|477
6YEF|1|a|G|478
6YEF|1|a|U|479
6YEF|1|a|G|480
6YEF|1|a|C|481
6YEF|1|a|A|482
6YEF|1|a|C|483
6YEF|1|a|A|484
6YEF|1|a|U|485
6YEF|1|a|C|486
6YEF|1|a|U|487
6YEF|1|a|U|488
6YEF|1|a|G|489
6YEF|1|a|A|490
6YEF|1|a|C|491
6YEF|1|a|G|492
6YEF|1|a|G|493
6YEF|1|a|U|494
6YEF|1|a|A|495
6YEF|1|a|C|496

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16