HL_6YEF_082

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_082 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2803

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6YEF|1|a|G|529
6YEF|1|a|C|530
6YEF|1|a|A|531
6YEF|1|a|G|532
6YEF|1|a|C|533
6YEF|1|a|C|534
6YEF|1|a|7MG|535
6YEF|1|a|C|536

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain v

mRNA