HL_6YEF_096

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

6YEF|1|a|A|1177, 6YEF|1|a|C|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_096 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3529

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6YEF|1|a|U|1175
6YEF|1|a|G|1176
6YEF|1|a|A|1177
6YEF|1|a|C|1178
6YEF|1|a|A|1179
6YEF|1|a|A|1180
6YEF|1|a|A|1181

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2