HL_6YEF_098

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0974

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YEF|1|a|C|1324
6YEF|1|a|U|1325
6YEF|1|a|G|1326
6YEF|1|a|C|1327
6YEF|1|a|A|1328
6YEF|1|a|A|1329
6YEF|1|a|C|1330
6YEF|1|a|U|1331
6YEF|1|a|C|1332
6YEF|1|a|G|1333

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14

Chain s

30S ribosomal protein S19