HL_6YEF_100

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUA

Length

5 nucleotides

Bulged bases

6YEF|1|a|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_100 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2458

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

6YEF|1|a|U|1460
6YEF|1|a|U|1461
6YEF|1|a|U|1462
6YEF|1|a|U|1463
6YEF|1|a|A|1464

Current chains

Chain a

16S rRNA

Nearby chains