HL_6YEF_104
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_104 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.1661
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6YEF|1|x|G|53
6YEF|1|x|5MU|54
6YEF|1|x|PSU|55
6YEF|1|x|C|56
6YEF|1|x|A|57
6YEF|1|x|A|58
6YEF|1|x|A|59
6YEF|1|x|U|60
6YEF|1|x|C|61
Current chains
- Chain x
- E-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L16
Coloring options: