HL_6YEF_107

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

6YEF|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_107 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.598

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6YEF|1|A|C|654
6YEF|1|A|A|655
6YEF|1|A|G|656
6YEF|1|A|U|657
6YEF|1|A|A|658
6YEF|1|A|A|659
6YEF|1|A|A|660
6YEF|1|A|U|661
6YEF|1|A|G|662

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4