HL_6YEF_117

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUUG

Length

5 nucleotides

Bulged bases

6YEF|1|a|U|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_117 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.4839

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6YEF|1|a|U|218
6YEF|1|a|C|219
6YEF|1|a|U|220
6YEF|1|a|U|221
6YEF|1|a|G|222

Current chains

Chain a

16S rRNA

Nearby chains