HL_6YHS_008

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_008 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0736

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

6YHS|1|1|C|246
6YHS|1|1|G|247
6YHS|1|1|G|248
6YHS|1|1|C|249
6YHS|1|1|G|250
6YHS|1|1|A|251
6YHS|1|1|G|252

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain H

50S ribosomal protein L15

Chain a

50S ribosomal protein L35