HL_6YHS_017
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6YHS|1|1|A|565
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YHS_017 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0842
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6YHS|1|1|U|557
6YHS|1|1|U|558
6YHS|1|1|U|559
6YHS|1|1|U|560
6YHS|1|1|G|561
6YHS|1|1|U|562
6YHS|1|1|A|563
6YHS|1|1|U|564
6YHS|1|1|A|565
6YHS|1|1|A|566
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L20
- Chain N
- 50S ribosomal protein L21
- Chain X
- 50S ribosomal protein L32
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