HL_6YHS_020

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUAG

Length

7 nucleotides

Bulged bases

6YHS|1|1|U|636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_020 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1552

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6YHS|1|1|U|632
6YHS|1|1|U|633
6YHS|1|1|A|634
6YHS|1|1|A|635
6YHS|1|1|U|636
6YHS|1|1|A|637
6YHS|1|1|G|638

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L33

Chain a

50S ribosomal protein L35