HL_6YHS_021

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_021 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1383

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YHS|1|1|G|703
6YHS|1|1|G|704
6YHS|1|1|U|705
6YHS|1|1|A|706
6YHS|1|1|A|707
6YHS|1|1|C|708
6YHS|1|1|A|709
6YHS|1|1|C|710

Current chains

Chain 1

23S ribosomal RNA

Nearby chains