HL_6YHS_027

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAAACAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.117

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|A|968
6YHS|1|1|A|969
6YHS|1|1|A|970
6YHS|1|1|A|971
6YHS|1|1|C|972
6YHS|1|1|A|973
6YHS|1|1|A|974
6YHS|1|1|U|975

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L20

Chain N

50S ribosomal protein L21

Chain V

50S ribosomal protein L30