HL_6YHS_028

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG

Length

4 nucleotides

Bulged bases

6YHS|1|1|A|1101

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_028 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1341

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|C|1033
6YHS|1|1|A|1034
6YHS|1|1|A|1101
6YHS|1|1|G|1102

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6