HL_6YHS_034

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6YHS|1|1|U|1384, 6YHS|1|1|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.098

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|G|1377
6YHS|1|1|U|1378
6YHS|1|1|U|1379
6YHS|1|1|A|1380
6YHS|1|1|A|1381
6YHS|1|1|U|1382
6YHS|1|1|A|1383
6YHS|1|1|U|1384
6YHS|1|1|U|1385
6YHS|1|1|C|1386

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23