HL_6YHS_045

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

6YHS|1|1|U|1859, 6YHS|1|1|A|1860, 6YHS|1|1|A|1861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_045 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3248

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6YHS|1|1|C|1857
6YHS|1|1|G|1858
6YHS|1|1|U|1859
6YHS|1|1|A|1860
6YHS|1|1|A|1861
6YHS|1|1|G|1862

Current chains

Chain 1

23S ribosomal RNA

Nearby chains