HL_6YHS_051

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6YHS|1|1|G|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_051 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0795

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6YHS|1|1|C|2237
6YHS|1|1|U|2238
6YHS|1|1|G|2239
6YHS|1|1|G|2240
6YHS|1|1|G|2241
6YHS|1|1|G|2242
6YHS|1|1|C|2243
6YHS|1|1|G|2244
6YHS|1|1|G|2245

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L16

Chain S

50S ribosomal protein L27