HL_6YLG_035
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6YLG|1|1|U|1606, 6YLG|1|1|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLG_035 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.0936
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6YLG|1|1|G|1599
6YLG|1|1|U|1600
6YLG|1|1|U|1601
6YLG|1|1|A|1602
6YLG|1|1|A|1603
6YLG|1|1|G|1604
6YLG|1|1|A|1605
6YLG|1|1|U|1606
6YLG|1|1|U|1607
6YLG|1|1|C|1608
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain b
- Nucleolar GTP-binding protein 1
- Chain g
- 60S ribosomal protein L34-A
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