3D structure

PDB id
6YLG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGUAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YLG_045 not in the Motif Atlas
Geometric match to HL_5J7L_143
Geometric discrepancy: 0.2337
The information below is about HL_5J7L_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6YLG|1|1|G|2110
6YLG|1|1|G|2111
6YLG|1|1|U|2112
6YLG|1|1|A|2113
6YLG|1|1|C|2114

Current chains

Chain 1
25S rRNA

Nearby chains

Chain I
Bud site selection protein 20
Chain R
60S ribosomal protein L19-A
Chain u
Ribosome biogenesis protein RLP24

Coloring options:


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