HL_6YLG_049

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACU

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_049 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3576

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6YLG|1|1|G|2253
6YLG|1|1|U|2254
6YLG|1|1|A|2262
6YLG|1|1|C|2263
6YLG|1|1|U|2264

Current chains

Chain 1

25S rRNA

Nearby chains

Chain K

Pre-rRNA-processing protein IPI1

Chain m

Nucleolar GTP-binding protein 2

Chain t

Protein SDA1