HL_6YLG_050

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6YLG|1|1|A|2372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_050 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.2899

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6YLG|1|1|G|2369
6YLG|1|1|G|2370
6YLG|1|1|G|2371
6YLG|1|1|A|2372
6YLG|1|1|A|2373
6YLG|1|1|C|2374
6YLG|1|1|G|2375
6YLG|1|1|G|2376
6YLG|1|1|G|2377
6YLG|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32

Chain s

Nuclear GTP-binding protein NUG1