HL_6YLG_054
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AACAGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLG_054 not in the Motif Atlas
- Homologous match to HL_8C3A_057
- Geometric discrepancy: 0.1719
- The information below is about HL_8C3A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_72777.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6YLG|1|1|A|2673
6YLG|1|1|A|2674
6YLG|1|1|C|2675
6YLG|1|1|A|2676
6YLG|1|1|G|2677
6YLG|1|1|A|2678
6YLG|1|1|A|2679
6YLG|1|1|A|2680
6YLG|1|1|U|2681
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain J
- 60S ribosomal protein L11-A
- Chain t
- Protein SDA1
Coloring options: