HL_6YLG_059

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6YLG|1|1|U|2842, 6YLG|1|1|U|2843, 6YLG|1|1|C|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLG|1|1|C|2840
6YLG|1|1|G|2841
6YLG|1|1|U|2842
6YLG|1|1|U|2843
6YLG|1|1|C|2844
6YLG|1|1|A|2845
6YLG|1|1|U|2846
6YLG|1|1|A|2847
6YLG|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain 5

rRNA-processing protein CGR1

Chain S

60S ribosomal protein L20-A

Chain s

Nuclear GTP-binding protein NUG1

Chain x

Ribosome assembly protein 4