HL_6YLG_061

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

6YLG|1|1|U|2921, 6YLG|1|1|G|2922, 6YLG|1|1|U|2923, 6YLG|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_061 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.2154

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6YLG|1|1|U|2920
6YLG|1|1|U|2921
6YLG|1|1|G|2922
6YLG|1|1|U|2923
6YLG|1|1|U|2924
6YLG|1|1|C|2925
6YLG|1|1|A|2926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2