HL_6YLH_054

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLH_054 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1719

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6YLH|1|1|A|2673
6YLH|1|1|A|2674
6YLH|1|1|C|2675
6YLH|1|1|A|2676
6YLH|1|1|G|2677
6YLH|1|1|A|2678
6YLH|1|1|A|2679
6YLH|1|1|A|2680
6YLH|1|1|U|2681

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

rRNA-processing protein CGR1

Chain J

60S ribosomal protein L11-A

Chain t

Protein SDA1