HL_6YLH_059

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6YLH|1|1|U|2842, 6YLH|1|1|U|2843, 6YLH|1|1|C|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLH|1|1|C|2840
6YLH|1|1|G|2841
6YLH|1|1|U|2842
6YLH|1|1|U|2843
6YLH|1|1|C|2844
6YLH|1|1|A|2845
6YLH|1|1|U|2846
6YLH|1|1|A|2847
6YLH|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain 5

rRNA-processing protein CGR1

Chain S

60S ribosomal protein L20-A

Chain s

Nuclear GTP-binding protein NUG1

Chain x

Ribosome assembly protein 4