HL_6YLX_012

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_012 not in the Motif Atlas

Homologous match to HL_8P9A_231

Geometric discrepancy: 0.4898

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6YLX|1|1|C|543
6YLX|1|1|C|544
6YLX|1|1|U|545
6YLX|1|1|C|546
6YLX|1|1|G|547
6YLX|1|1|G|548

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A