HL_6YLX_027

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAUGGAAGUCGG

Length

13 nucleotides

Bulged bases

6YLX|1|1|U|1241, 6YLX|1|1|A|1245, 6YLX|1|1|G|1246, 6YLX|1|1|U|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_027 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.243

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6YLX|1|1|C|1238
6YLX|1|1|C|1239
6YLX|1|1|A|1240
6YLX|1|1|U|1241
6YLX|1|1|G|1242
6YLX|1|1|G|1243
6YLX|1|1|A|1244
6YLX|1|1|A|1245
6YLX|1|1|G|1246
6YLX|1|1|U|1247
6YLX|1|1|C|1248
6YLX|1|1|G|1249
6YLX|1|1|G|1250

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1