HL_6YLX_029
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUUGAUAUGAUGC
- Length
- 13 nucleotides
- Bulged bases
- 6YLX|1|1|G|1354, 6YLX|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_029 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2454
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YLX|1|1|G|1346
6YLX|1|1|U|1347
6YLX|1|1|U|1348
6YLX|1|1|G|1349
6YLX|1|1|A|1350
6YLX|1|1|U|1351
6YLX|1|1|A|1352
6YLX|1|1|U|1353
6YLX|1|1|G|1354
6YLX|1|1|A|1355
6YLX|1|1|U|1356
6YLX|1|1|G|1357
6YLX|1|1|C|1358
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
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