HL_6YLX_040

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6YLX|1|1|C|1793, 6YLX|1|1|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_040 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0534

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6YLX|1|1|C|1792
6YLX|1|1|C|1793
6YLX|1|1|G|1794
6YLX|1|1|U|1795
6YLX|1|1|G|1796

Current chains

Chain 1

25S rRNA

Nearby chains