HL_6YLX_046
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6YLX|1|1|A|2138, 6YLX|1|1|A|2139, 6YLX|1|1|U|2140, 6YLX|1|1|U|2141, 6YLX|1|1|A|2144
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_046 not in the Motif Atlas
- Geometric match to HL_4WF9_003
- Geometric discrepancy: 0.1276
- The information below is about HL_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6YLX|1|1|U|2135
6YLX|1|1|C|2136
6YLX|1|1|U|2137
6YLX|1|1|A|2138
6YLX|1|1|A|2139
6YLX|1|1|U|2140
6YLX|1|1|U|2141
6YLX|1|1|A|2142
6YLX|1|1|A|2143
6YLX|1|1|A|2144
6YLX|1|1|A|2145
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain j
- 60S ribosomal protein L37-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
Coloring options: