HL_6YLX_047

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGGGC

Length

6 nucleotides

Bulged bases

6YLX|1|1|G|2371

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_047 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1305

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6YLX|1|1|G|2369
6YLX|1|1|G|2370
6YLX|1|1|G|2371
6YLX|1|1|G|2376
6YLX|1|1|G|2377
6YLX|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32

Chain s

Nuclear GTP-binding protein NUG1