HL_6YLX_048
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- 6YLX|1|1|U|2842, 6YLX|1|1|A|2845, 6YLX|1|1|U|2846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_048 not in the Motif Atlas
- Geometric match to HL_4V9F_070
- Geometric discrepancy: 0.3092
- The information below is about HL_4V9F_070
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
6YLX|1|1|C|2840
6YLX|1|1|G|2841
6YLX|1|1|U|2842
6YLX|1|1|U|2843
6YLX|1|1|C|2844
6YLX|1|1|A|2845
6YLX|1|1|U|2846
6YLX|1|1|A|2847
6YLX|1|1|G|2848
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L21-A
- Chain s
- Nuclear GTP-binding protein NUG1
Coloring options: