HL_6YLX_050
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUUGUUCACCC
- Length
- 13 nucleotides
- Bulged bases
- 6YLX|1|1|U|2921, 6YLX|1|1|G|2922, 6YLX|1|1|U|2923
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLX_050 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3668
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YLX|1|1|G|2917
6YLX|1|1|G|2918
6YLX|1|1|A|2919
6YLX|1|1|U|2920
6YLX|1|1|U|2921
6YLX|1|1|G|2922
6YLX|1|1|U|2923
6YLX|1|1|U|2924
6YLX|1|1|C|2925
6YLX|1|1|A|2926
6YLX|1|1|C|2927
6YLX|1|1|C|2928
6YLX|1|1|C|2929
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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