HL_6YLX_056

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6YLX|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_056 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.2448

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6YLX|1|1|G|3303
6YLX|1|1|U|3304
6YLX|1|1|A|3305
6YLX|1|1|U|3306
6YLX|1|1|A|3307
6YLX|1|1|C|3308
6YLX|1|1|G|3309
6YLX|1|1|A|3310
6YLX|1|1|C|3311

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A