HL_6YLX_057

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

6YLX|1|1|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLX_057 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.248

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YLX|1|1|C|3350
6YLX|1|1|U|3351
6YLX|1|1|U|3352
6YLX|1|1|G|3353

Current chains

Chain 1

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L22-A