3D structure

PDB id
6YLX (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE1 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YLX_064 not in the Motif Atlas
Homologous match to HL_8C3A_016
Geometric discrepancy: 0.1385
The information below is about HL_8C3A_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6YLX|1|1|U|707
6YLX|1|1|G|708
6YLX|1|1|A|709
6YLX|1|1|A|710
6YLX|1|1|A|711
6YLX|1|1|G|712

Current chains

Chain 1
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain a
60S ribosomal protein L28
Chain i
60S ribosomal protein L36-A

Coloring options:


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