HL_6YLX_067

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

6YLX|1|1|U|2921, 6YLX|1|1|G|2922, 6YLX|1|1|U|2923, 6YLX|1|1|U|2924, 6YLX|1|1|C|2925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLX|1|1|G|2918
6YLX|1|1|A|2919
6YLX|1|1|U|2920
6YLX|1|1|U|2921
6YLX|1|1|G|2922
6YLX|1|1|U|2923
6YLX|1|1|U|2924
6YLX|1|1|C|2925
6YLX|1|1|A|2926
6YLX|1|1|C|2927
6YLX|1|1|C|2928

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase