HL_6YMM_001

3D structure

PDB id

6YMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the SAM-SAH riboswitch with SAM from space group P312

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CGGCUUCCUG

Length

10 nucleotides

Bulged bases

6YMM|1|A|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YMM_001 not in the Motif Atlas

Geometric match to HL_6YML_001

Geometric discrepancy: 0.0419

The information below is about HL_6YML_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YMM|1|A|C|15
6YMM|1|A|G|16
6YMM|1|A|G|17
6YMM|1|A|C|18
6YMM|1|A|U|19
6YMM|1|A|U|20
6YMM|1|A|C|21
6YMM|1|A|C|22
6YMM|1|A|U|23
6YMM|1|A|G|24

Current chains

Chain A

Chains: A

Nearby chains

Chain B

Chains: B,D