HL_6YS3_037

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6YS3|1|b|A|1455, 6YS3|1|b|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YS3|1|b|G|1452
6YS3|1|b|C|1453
6YS3|1|b|G|1454
6YS3|1|b|A|1455
6YS3|1|b|C|1456
6YS3|1|b|G|1457
6YS3|1|b|G|1458
6YS3|1|b|U|1459
6YS3|1|b|U|1460
6YS3|1|b|G|1461
6YS3|1|b|U|1462
6YS3|1|b|C|1463

Current chains

Chain b

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L17