HL_6YS3_041

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6YS3|1|b|A|1616, 6YS3|1|b|A|1618, 6YS3|1|b|A|1620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS3_041 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0772

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6YS3|1|b|C|1614
6YS3|1|b|G|1615
6YS3|1|b|A|1616
6YS3|1|b|C|1617
6YS3|1|b|A|1618
6YS3|1|b|C|1619
6YS3|1|b|A|1620
6YS3|1|b|G|1621

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain s

50S ribosomal protein L22

Chain z

Gamma-crystallin B