HL_6YS3_054
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 6YS3|1|b|G|2254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YS3_054 not in the Motif Atlas
- Homologous match to HL_5J7L_186
- Geometric discrepancy: 0.0909
- The information below is about HL_5J7L_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YS3|1|b|C|2252
6YS3|1|b|U|2253
6YS3|1|b|G|2254
6YS3|1|b|G|2255
6YS3|1|b|G|2256
6YS3|1|b|G|2257
6YS3|1|b|C|2258
6YS3|1|b|G|2259
6YS3|1|b|G|2260
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L16
- Chain v
- Transfer RNA; tRNA
- Chain y
- 50S ribosomal protein L27
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