HL_6YS3_069

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6YS3|1|b|A|2824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS3_069 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0726

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YS3|1|b|G|2823
6YS3|1|b|A|2824
6YS3|1|b|A|2825
6YS3|1|b|G|2826
6YS3|1|b|A|2827
6YS3|1|b|C|2828
6YS3|1|b|G|2829
6YS3|1|b|A|2830
6YS3|1|b|C|2831

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19