HL_6YS5_006

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

6YS5|1|3|C|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YS5_006 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2887

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6YS5|1|3|U|1162
6YS5|1|3|G|1163
6YS5|1|3|A|1164
6YS5|1|3|C|1165
6YS5|1|3|A|1166
6YS5|1|3|A|1167
6YS5|1|3|A|1168

Current chains

Chain 3

16S ribosomal RNA

Nearby chains