HL_6YSI_004

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUUAAG

Length

6 nucleotides

Bulged bases

6YSI|1|1|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSI_004 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.216

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6YSI|1|1|U|137
6YSI|1|1|U|138
6YSI|1|1|U|139
6YSI|1|1|A|140
6YSI|1|1|A|141
6YSI|1|1|G|142

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L23