HL_6YSI_018

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAUAG

Length

7 nucleotides

Bulged bases

6YSI|1|1|U|604, 6YSI|1|1|U|606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YSI_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.0648

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6YSI|1|1|C|602
6YSI|1|1|G|603
6YSI|1|1|U|604
6YSI|1|1|A|605
6YSI|1|1|U|606
6YSI|1|1|A|607
6YSI|1|1|G|608

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4